Drosophilid genome studies published

2
Today
sees theannouncement
inNature
by theDrosophila12
Genomes Consortium
of a further 10 drosophilid genome sequences, which were
the talk of the48th AnnualDrosophila
Research Conference
earlier this year.

BioMed Central’s journals are publishing seven open
access companion papers analyzing these genome sequences. The papers inGenome Biology,BMC Genomics,BMC Evolutionary BiologyandBMC Bioinformaticsspan a wide range of topics, including genome-wide surveys
of RNAs, codon usage, comparative genomics of gene families and the evolution
of gene order and sequences.

The
sequencing of theDrosophila
melanogaster
genome
at the turn of the millennium was a landmark in
genome research, acting as a stepping stone to
thehuman genome,
and furthering understanding of this
favourite model organism. The publication of theDrosophila
pseudoobscura
genomebuilt
upon this
. As theDrosophilagenus has over 2,000 known species,
there is enormous scope in sequencing further members of this genus to study
the molecular evolution of closely related genomes.

D. simulansandD. yakuba
were sequenced by the Washington University Genome Center,D. erecta,D.
ananassae
,D. virilis,D. mojavensisandD. grimshawiwere
sequenced by Agencourt, Inc.,D. willistoniwas sequenced by the J.
Craig Venter Institute, andD. persimilisandD. sechelliawere
sequenced by the Broad Institute.

Among the articles published by BioMed Central, a
trio of papers studies global genomic patterns, looking atcodon usage,sequence evolutionand theevolution of gene order and
chromosome rearrangements.

Two papers study the
conservation of sequence motifs to uncover novel小分子核糖核酸and othernon-coding RNAs.

On a smaller scale these
sequences allow comparative studies of the evolution of gene families, and two
papers analyzeoxidative
phosphorylation genes
and theOdorant-Binding Protein family.

The addition of these 10 genomes to the roster of
completed genomes is a further milestone in comparative genomics. As
demonstrated by these companion studies, these sequences, along with the
already well-annotated genome ofDrosophila melanogaster, are an
extremely useful tool in exploring speciation, evolution and development, and
should be indispensable for biologists.

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2Comments

marc perry

While on the surface this seems like an important, intriguing and interesting link, would it not be more helpful if there was a concise listing of the seven abovementioned papers in BMC stable?

matt hodgkinson

The seven articles that analyse the 12 drosophilid genomes are:

Viera FG, Sanchez-Gracia A, Rozas J:Comparative genomic analysis of the Odorant-Binding Protein family in 12Drosophila基因组:净化选择和出生和死亡evolution.Genome Biology2007,8:R235

Bhutkar A, Gelbart WM, Smith TF:Inferring genome-scale rearrangement phylogeny and ancestral gene order: A Drosophila case study.Genome Biol2007,8:R236

Gu J, Fu H, Zhang X, Li Y:Identifications of conserved 7-mers in 3-UTRs and microRNAs inDrosophila.BMC Bioinformatics2007,8:432

Porcelli D, Barsanti P, Pesole G, Caggese C:The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates.BMC Evolutionary Biology2007,7:215

Vicario S, Moriyama EN, Powell JR:Codon usage in twelve species ofDrosophila.BMC Evol Biol2007,7:226

Rose D, Hackermueller J, Washietl S, Reiche K, Hertel J, Findeiss S, Stadler PF, Prohaska SJ:Computational RNomics of Drosophilids.BMC Genomics2007,8:406

Gallach M, Arnau V, Marin I:Global patterns of sequence evolution inDrosophila.BMC Genomics2007,8:408

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