Genome Biology publishes MiSeq data

The pioneering genomicist Sydney Brenner has a sound bite that the most important-omicsdiscipline of all isecon-omics.

The holy grail of biomedical research is to translate scientific achievement into practical applications in the clinic. And for genomics to conquer the local hospital ward, it must not only begenom-ical – but alsoecon-omical.

2011 has seen economical genomics arrive one step closer with the unveiling of two sequencing machines of note that are designed to be affordable to small operations: Illumina'sMiSeqand Life Technologies'Ion Torrent Personal Genome Machine.

MiSeq machineIon Torrent Personal Genome Machine

Anew articlepublished inGenome BiologybyOlivier Harismendy, Kelly Frazer and colleaguesis one of the first publications to showcase MiSeq data. The focus of the article is an ultra-deep targeted sequencing method ('UDT-seq') for the detection of low prevalence mutations in heterogeneous tumor samples. In the article, the authors use calibrated human DNA samples to demonstrate the superior performance of MiSeq over Illumina'sGenome Analyzer IIplatform, in terms of both sensitivity and speed.

The impressive quality of the data generated by MiSeq is an encouraging sign that routine sequencing in the clinic may soon become a reality, and that a new era of radically different diagnosis and pharmacology stratagies may be just around the corner.

As with all sequencing data described inGenome Biologyarticles, the MiSeq data are available in a public repository (NBCI SRA:SRP009487). The MiSeq vs GAII comparison is also nicely complemented bylast month's article from Heinz Himmelbauer and colleagues, which compared the errors and biases in GAII and IlluminaHiSeqdatasets.

View the latest posts on the On Biology homepage

Comments